

Typically, confidence intervals are expressed as a twosided range. You might state, for example, with 95% confidence, that the true value of a parameter such as mean, EC50, relative risk, difference, etc., lies in a range between two values. We call this interval “two sided” because it is bounded by both lower and upper confidence limits.
In some circumstances, it can make more sense to express the confidence interval in only one direction – to either the lower or upper confidence limit. This can best be illustrated by following an example.
A recent study was performed to evaluate the effectiveness of a new drug in the eradication of Heliobacter pylori infection, and to determine whether or not it was inferior to the standard drug. (This example was adapted from one presented in reference 1). The eradication rate for the new drug was 86.5% (109/126) compared with 85.3% (110/129) for patients treated with the standard therapy.
In this study, the difference between the eradication rates of the two treatments was 1.2%. The 95% confidence interval extends at the lower limit for the new drug from an eradication rate of 7.3% worse than standard drug, to the upper limit with an eradication rate of 9.7% better.
If we assume that the subjects of the study are representative of a larger population, this means there is a 95% chance that this range of values includes the true difference of the eradication rates of the two drugs. Splitting the remaining 5%, there is an additional 2.5% chance that the new treatment increases the eradication rate by more than 9.7%, and a 2.5% chance that the new treatment decreases the eradication rate by more than 7.3%.
In this case, our goal is to show that the new drug is not worse than the old one. So we can combine our 95% confidence level with the 2.5% upper limit, and say that there is a 97.5% chance that the eradication rate with the new drug is no more than 7.3% worse than the eradication rate with standard drug.
It is conventional, however, to state confidence intervals with 95%, not 97.5%, confidence. We can easily create a onesided 95% confidence interval. To do this, we simply compute a 90% twosided confidence interval instead of 95%.
The 90% CI for difference in eradication rate extends from 5.9% to 8.4%. Since we are less confident that it includes the true value, it doesn't extend as far as 95% interval. We can restate this to say that the 95% confidence interval is greater than 5.9%. Thus, we are 95% sure that the new drug has an eradication rate not more than 5.9% worse than that of the standard drug.
In this example of testing noninferiority, it makes sense to express a onesided confidence interval as the lower limit only. In other situations, it can make sense to express a onesided confidence limit as an upper limit only. For example, in toxicology you may care only about the upper confidence limit.
GraphPad Prism does not compute onesided confidence intervals directly. But, as the example shows, it is easy to create the onesided intervals yourself. Simply ask Prism to create a 90% confidence interval for the value you care about. If you only care about the lower limit, say that you are 95% sure the true value is higher than that (90%) lower limit. If you only care about the upper limit, say that you are 95% sure the true value is lower than the (90%) upper limit.
1. S. J. Pocock, The pros and cons of noninferiority trials, Fundamental & Clinical Pharmacology, 17: 483490 (2003).