GraphPad Curve Fitting Guide

Equation: [Inhibitor] vs. response -- Variable slope

Equation: [Inhibitor] vs. response -- Variable slope

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Equation: [Inhibitor] vs. response -- Variable slope

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This equation is used when X values are concentrations or doses. Use a related equation when X values are logarithms of concentrations or doses.

Introduction

Many log(inhibitor) vs. response curves follow the familiar symmetrical sigmoidal shape. The goal is to determine the IC50 of the inhibitor - the concentration that provokes a response half way between the maximal (Top) response and the maximally inhibited (Bottom) response.

Many inhibitory dose-response curves have a standard slope of -1.0. This model does not assume a standard slope but rather fits the Hill Slope from the data, and so is called a Variable slope model. This is preferable when you have plenty of data points.  It is also called a four-parameter dose-response curve, or four-parameter logistic curve, abbreviated 4PL.

Step by step

Create an XY data table. Enter the concentrations of the inhibitor into X. Enter response into Y in any convenient units. Enter one data set into column A, and use columns B, C... for different treatments, if needed.

From the data table, click Analyze, choose nonlinear regression, choose the panel of equations "Dose-response curves - Inhibition" and then choose the equation "[Inhibitor] vs. response -- Variable slope".

If you have subtracted off any basal response, consider constraining Bottom to a constant value of 0.

Since the uncertainty of the EC50 is very asymmetric, be sure to choose to compute the confidence intervals using the likelihood ratio asymmetric method.

Double click on the X axis of the graph, and choose (at the upper left of the Format Graph dialog) to stretch the axis to a logarithmic scale.

Model

Y=Bottom + (Top-Bottom)/(1+(IC50/X)^HillSlope)

 

Interpret the parameters

IC50 is the concentration of agonist that gives a response half way between Bottom and Top. This is not the same as the response at Y=50. Depending on which units Y is expressed in, and the values of Bottom and Top, the IC50 may give a response nowhere near "50". Prism reports both the IC50 and its log.

HillSlope describes the steepness of the family of curves. A HillSlope of -1.0 is standard, and you should consider constraining the Hill Slope to a constant value of -1.0. A Hill slope more negative than -1 (say -2) is steeper.

Top and Bottom are plateaus in the units of the Y axis.