GraphPad Curve Fitting Guide

Equation: Two phase decay

Equation: Two phase decay

Previous topic Next topic No expanding text in this topic  

Equation: Two phase decay

Previous topic Next topic JavaScript is required for expanding text JavaScript is required for the print function Mail us feedback on this topic!  

Introduction

An exponential decay equation models many chemical and biological processes. It is used whenever the rate at which something happens is proportional to the amount which is left.

A two-phase model is used when the outcome you measure is the result of the sum of a fast and slow exponential decay. This is also called a double exponential decay.

Entering data

Create an XY data table. Enter time into X, and response (binding, concentration ..) into Y. If you have several experimental conditions, place the first into column A, the second into column B, etc.

After entering data, click Analyze, choose nonlinear regression, choose the panel of exponential equations, and choose Two phase decay.

Consider constraining Plateau to a constant value of zero

If you have subtracted off any background signal, then you know the curve has to plateau at Y=0. In this case, you should constrain the parameter Plateau to be a constant value equal to zero. To do this, go to the Constrain tab of the nonlinear regression dialog, set the drop down next to Plateau to "Constant equal to" and enter the value 0.0.

In some situations, you also know that the plateau has to be zero, even without subtracting a background. For example, in pharmacokinetics you know the drug concentration (usually) has to descend to zero at long time points.  

Model

SpanFast=(Y0-Plateau)*PercentFast*.01

SpanSlow=(Y0-Plateau)*(100-PercentFast)*.01

Y=Plateau + SpanFast*exp(-KFast*X) + SpanSlow*exp(-KSlow*X)

Y0 is the Y value when X (time) is zero. It is expressed in the same units as Y,

Plateau is the Y value at infinite times, expressed in the same units as Y.

Kfast and Kslow are the two rate constants, expressed in reciprocal of the X axis time units. If X is in minutes, then K is expressed in inverse minutes.

TauFast and TauSlow are the two time constants, expressed in the same units as the X axis. They are computed as the reciprocals of the rate constants.

Half-life (fast) and Half-life (slow) are in the time units of the X axis. They are computed as ln(2)/K.

PercentFast is the fraction of the span (from Y0 to Plateau) accounted for by the faster of the two components.

Interpretation of the parameters when you constrain Plateau to a constant value of zero

If you have subtracted off any background signal, then you know the curve has to plateau at Y=0. You also know the curve has to descend to Y=0 in some other situations such as pharmacokinetics. In these cases, you should constrain the parameter Plateau to be a constant equal to zero.

With this constraint, it is easier to understand the model. It is the sum of two components, each defined by a rate constant and a starting Y value. The two rate constants are Kfast and Kslow. The starting Y values are defined by these equations:

SpanFast = Y0*PercentFast*.01

SpanSlow = Y0*(100-PercentFast)*.01

The names SpanFast and SpanSlow are probably better thought of as Y0Fast and Y0Slow.

Note the two phases are both happening at all time points. It is not correct to think that first the fast phase finishes, and only then does  the slow phase start.